Augmented Vision

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1. Muhammad Ali Ibrahim Muhammad Nabeel Asim; Muhammad Ali Ibrahim; Ahtisham Fazeel; Andreas Dengel; Sheraz Ahmed

   DNA-MP: a generalized DNA modifications predictor for multiple species based on powerful sequence encoding method

   In: Briefings in Bioinformatics, Vol. 24, No. 1, Pages 546-566, Oxford University Press, 12/2022.

2. Muhammad Nabeel Asim; Ahtisham Fazeel; Muhammad Ali Ibrahim; Andreas Dengel; Sheraz Ahmed

   MP-VHPPI: Meta predictor for viral host protein-protein interaction prediction in multiple hosts and viruses

   In: Frontiers in Medicine, Vol. 9, Pages 1-20, Frontiers Media SA, 11/2022.

3. Muhammad Nabeel Asim; Muhammad Ali Ibrahim; Muhammad Imran Malik; Imran Razzak; Andreas Dengel; Sheraz Ahmed

   Histone-Net: a multi-paradigm computational framework for histone occupancy and modification prediction

   In: Complex & Intelligent Systems, Pages 1-21, Springer, 7/2022.

4. Muhammad Nabeel Asim; Muhammad Ali Ibrahim; Muhammad Imran Malik; Andreas Dengel; Sheraz Ahmed

   LGCA-VHPPI: A local-global residue context aware viral-host protein-protein interaction predictor

   In: PLoS ONE (PLOS), Vol. 7, Pages 1-26, PLOS, 2022.

5. Muhammad Nabeel Asim; Muhammad Ali Ibrahim; Muhammad Imran Malik; Christoph Zehe; Olivier Cloarec; Johan Trygg; Andreas Dengel; Sheraz Ahmed

   EL-RMLocNet: An explainable LSTM network for RNA-associated multi-compartment localization prediction

   In: Computational and Structural Biotechnology Journal, Vol. 20, Pages 3986-4002, Elsevier, 2022.

6. Muhammad Nabeel Asim; Muhammad Ali Ibrahim; Muhammad Imran Malik; Andreas Dengel; Sheraz Ahmed

   Advances in Computational Methodologies for Classification and Sub-Cellular Locality Prediction of Non-Coding RNAs

   In: International Journal of Molecular Sciences (IJMS), Vol. 22, No. 8719, Pages 1-42, MDPI, 8/2021.

7. Muhammad Nabeel Asim; Muhammad Ali Ibrahim; Christoph Zehe; Olivier Cloarec; Rickard Sjogren; Johan Trygg; Andreas Dengel; Sheraz Ahmed

   L2S-MirLoc: A Lightweight Two Stage MiRNA Sub-Cellular Localization Prediction Framework

   In: IJCNN 2021 Conference Proceedings. International Joint Conference on Neural Networks (IJCNN-2021), July 18-22, ISBN 978-0-7381-3366-9, IEEE, 2021.

8. Muhammad Nabeel Asim; Muhammad Ali Ibrahim; Muhammad Imran Malik; Andreas Dengel; Sheraz Ahmed

   ChrSLoc-Net: Machine Learning-Based Prediction of Channelrhodopsins Proteins within Plasma Membrane

   In: 2021 BHI Conference Proceedings. IEEE-EMBS International Conference on Biomedical and Health Informatics (BHI-2021), July 27-30, Pages 1-4, ISBN …

9. Muhammad Nabeel Asim; Muhammad Usman Ghani; Muhammad Ali Ibrahim; Waqar Mahmood; Andreas Dengel; Sheraz Ahmed

   Benchmarking performance of machine and deep learning-based methodologies for Urdu text document classification

   In: Neural Computing and Applications, Vol. 33, Pages 5437-5469, Springer, 9/2020.

10. Muhammad Nabeel Asim; Muhammad Ali Ibrahim; Muhammad Imran Malik; Andreas Dengel; Sheraz Ahmed

    Enhancer-DSNet: A Supervisedly Prepared Enriched Sequence Representation for the Identification of Enhancers and Their Strength

    In: International Conference on Neural Information Processing. International Conference on Neural Information Processing (ICONIP-2020), Springer, …

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