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Publications

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  1. Nabeel Khalid; Tiago Comassetto Froes; Maria Caroprese; Gillian Lovell; Johan Trygg; Andreas Dengel; Sheraz Ahmed

    PACE: Point Annotation-Based Cell Segmentation for Efficient Microscopic Image Analysis

    In: ICANN 2023. International Conference on Artificial Neural Networks (ICANN-2023), 32nd International Conference on Artificial Neural Networks, …

  2. Nabeel Khalid; Fabian Schmeisser; Mohammadmahdi Koochali; Mohsin Munir; Christoffer Edlund; Rickard Sjögren; Andreas Dengel; Sheraz Ahmed

    Point2Mask: A Weakly Supervised Approach for Cell Segmentation using Point Annotation

    In: 2022 Annual Conference on Medical Image Understanding and Analysis. Medical Image Understanding and Analysis (MIUA-2022), July 25-29, Cambridge, …

  3. Nabeel Khalid; Mohammadmahdi Koochali; Vikas Rajashekar; Mohsin Munir; Christoffer Edlund; Rickard Sjögren; Andreas Dengel; Sheraz Ahmed

    DeepMuCS: A Framework for Co-culture Microscopic Image Analysis: From Generation to Segmentation

    In: 2022 IEEE-EMBS International Conference on Biomedical and Health Informatics (BHI). IEEE-EMBS International Conference on Biomedical and Health …

  4. Christoffer Edlund; Timothy R. Jackson; Nabeel Khalid; Nicola Bevan; Timothy Dale; Andreas Dengel; Sheraz Ahmed; Johan Trygg; Rickard Sjögren

    LIVECell—A large-scale dataset for label-free live cell segmentation

    In: Nature Research, Vol. None, Pages 1-8, Nature Methods, 8/2021.

  5. Nabeel Khalid; Mohsin Munir; Christoffer Edlund; Timothy R Jackson; Johan Tryggy; Rickard Sjögren; Andreas Dengel; Sheraz Ahmed

    DeepCIS: An end-to-end Pipeline for Cell-type aware Instance Segmentation in Microscopic Images

    In: IEEE-EMBS INTERNATIONAL CONFERENCE ON BIOMEDICAL AND HEALTH INFORMATICS (BHI’21) JOINTLY ORGANISED WITH THE 17TH IEEE-EMBS INTERNATIONAL …

  6. Anna M. Schlagowski; Katharina Knöringer; Sandrine Morlot; Ana Sáchez Vicente; Felix Boos; Nabeel Khalid; Sheraz Ahmed; Jana Schramm; Lena Maria Murschall; Per Haberkant; Frank Stein; Jan Riemer; Benedikt Westermann; Ralf J. Braun; Konstanze F. Winklhofer; Gilles Charvin; Johannes M. Herrmann1

    Increased levels of the mitochondrial import factor Mia40 prevent the aggregation of polyQ proteins in the cytosol

    In: The EMBO Journal (EMBO J 2021), Vol. None, Pages 1-44, The EMBO Journal, 6/2021.

  7. Nabeel Khalid; Mohsin Munir; Christoffer Edlund; Timothy R Jackson; Johan Tryggy; Rickard Sjögren; Andreas Dengel; Sheraz Ahmed

    DeepCeNS: An end-to-end Pipeline for Cell and Nucleus Segmentation in Microscopic Images

    In: 2021 International Joint Conference on Neural Networks (IJCNN). International Joint Conference on Neural Networks (IJCNN-2021), July 18-20, …