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Publikationen

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  1. Nabeel Khalid; Anwai Archit; Luca Freckmann; Sushmita Nair; Paul Hilt; Vikas Rajashekar; Marei Freitag; Carolin Teuber; Genevieve Buckley; Sebastian von Haaren; Sagnik Gupta; Andreas Dengel; Sheraz Ahmed; Constantin Pape

    Segment Anything for Microscopy

    In: Nature, Vol. 22, Pages 579-591, Nature Methods, 2/2025.

  2. Nabeel Khalid; Maria Caropresse; Gillian Lovell; Andreas Dengel; Sheraz Ahmed

    CellSpot: Deep Learning-Based Efficient Cell Center Detection in Microscopic Images

    In: 33rd International Conference on Artificial Neural Networks ICANN. International Conference on Artificial Neural Networks (ICANN-2024), September 17-20, Lugano, Switzerland, Springer Nature, Switzerland, 9/2024.

  3. Nabeel Khalid; Mohammadmahdi Koochali; Duway Nicolas Lesmes Leon; Maria Caroprese; Gillian Lovell; Daniel A Porto; Johan Trygg; Andreas Dengel; Sheraz Ahmed

    CellGenie: An end-to-end Pipeline for Synthetic Cellular Data Generation and Segmentation: A Use Case for Cell Segmentation in Microscopic Images

    In: 28th UK Conference on Medical Image Understanding and Analysis - MIUA. Medical Image Understanding and Analysis (MIUA-2024), Spriner Nature, 8/2024.

  4. Nabeel Khalid; Maria Caroprese; Gillian Lovell; Daniel A Porto; Johan Trygg; Andreas Dengel; Sheraz Ahmed

    Bounding Box is all you need: Learning to Segment Cells in 2D Microscopic Images via Box Annotations

    In: 28th UK Conference on Medical Image Understanding and Analysis - MIUA. Medical Image Understanding and Analysis (MIUA-2024), Spriner Nature, 8/2024.

  5. Nabeel Khalid; Tiago Comassetto Froes; Maria Caroprese; Gillian Lovell; Johan Trygg; Andreas Dengel; Sheraz Ahmed

    PACE: Point Annotation-Based Cell Segmentation for Efficient Microscopic Image Analysis

    In: ICANN 2023. International Conference on Artificial Neural Networks (ICANN-2023), 32nd International Conference on Artificial Neural Networks, located at ICANN 2023, September 26-29, Heraklion, Crete, Greece, Springer, 9/2023.

  6. Nabeel Khalid; Fabian Schmeisser; Mohammadmahdi Koochali; Mohsin Munir; Christoffer Edlund; Rickard Sjögren; Andreas Dengel; Sheraz Ahmed

    Point2Mask: A Weakly Supervised Approach for Cell Segmentation using Point Annotation

    In: 2022 Annual Conference on Medical Image Understanding and Analysis. Medical Image Understanding and Analysis (MIUA-2022), July 25-29, Cambridge, United Kingdom, MIUA, 2022.

  7. Nabeel Khalid; Mohammadmahdi Koochali; Vikas Rajashekar; Mohsin Munir; Christoffer Edlund; Rickard Sjögren; Andreas Dengel; Sheraz Ahmed

    DeepMuCS: A Framework for Co-culture Microscopic Image Analysis: From Generation to Segmentation

    In: 2022 IEEE-EMBS International Conference on Biomedical and Health Informatics (BHI). IEEE-EMBS International Conference on Biomedical and Health Informatics (BHI-2022), September 27-30, Ioannina, Greece, IEEE BHI-BSN 2022, 2022.

  8. Christoffer Edlund; Timothy R. Jackson; Nabeel Khalid; Nicola Bevan; Timothy Dale; Andreas Dengel; Sheraz Ahmed; Johan Trygg; Rickard Sjögren

    LIVECell—A large-scale dataset for label-free live cell segmentation

    In: Nature Research, Vol. None, Pages 1-8, Nature Methods, 8/2021.

  9. Nabeel Khalid; Mohsin Munir; Christoffer Edlund; Timothy R Jackson; Johan Tryggy; Rickard Sjögren; Andreas Dengel; Sheraz Ahmed

    DeepCIS: An end-to-end Pipeline for Cell-type aware Instance Segmentation in Microscopic Images

    In: IEEE-EMBS INTERNATIONAL CONFERENCE ON BIOMEDICAL AND HEALTH INFORMATICS (BHI’21) JOINTLY ORGANISED WITH THE 17TH IEEE-EMBS INTERNATIONAL CONFERENCE ON WEARABLE AND IMPLANTABLE BODY SENSOR NETWORKS (BSN’21). IEEE-EMBS International Conference on Biomedical and Health Informatics (BHI-2021), July 27-30, Athens, Europe, Greece, ISBN 978-1-6654-4770-6, IEEE, 8/2021.

  10. Anna M. Schlagowski; Katharina Knöringer; Sandrine Morlot; Ana Sáchez Vicente; Felix Boos; Nabeel Khalid; Sheraz Ahmed; Jana Schramm; Lena Maria Murschall; Per Haberkant; Frank Stein; Jan Riemer; Benedikt Westermann; Ralf J. Braun; Konstanze F. Winklhofer; Gilles Charvin; Johannes M. Herrmann1

    Increased levels of the mitochondrial import factor Mia40 prevent the aggregation of polyQ proteins in the cytosol

    In: The EMBO Journal (EMBO J 2021), Vol. None, Pages 1-44, The EMBO Journal, 6/2021.